How to Install and Uninstall density-fitness Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: December 29,2024

1. Install "density-fitness" package

This guide covers the steps necessary to install density-fitness on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                density-fitness
            
                    
    
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2. Uninstall "density-fitness" package

This tutorial shows how to uninstall density-fitness on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                density-fitness
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the density-fitness package on Ubuntu 21.04 (Hirsute Hippo)

Package: density-fitness
Architecture: amd64
Version: 1.0.0-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 383
Depends: libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.14), libcifpp1 (>= 1.0.1), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.0), libpdb-redo1 (>= 1.0.1), libstdc++6 (>= 9), libzeep5 (>= 5.0.2)
Filename: pool/universe/d/density-fitness/density-fitness_1.0.0-2_amd64.deb
Size: 104368
MD5sum: 909ae54206d87eb54addb540289e146d
SHA1: 555e3ae4a235964db71db641f9e24b7cb622c74c
SHA256: 4967ee9c47b2292e58748fb3b272cd233bb7beda6ac46f8d7d075de17cce6694
SHA512: 6fe2e80059f0d3727db802ca6d5c9ae4e010338e2caa4dba2f1ab2841e78e589d5cc910074b771c0619f552a4c86035c944554f4cb0ef0505caa6809c9af02c5
Homepage: https://github.com/PDB-REDO/density-fitness
Description-en: Calculates per-residue electron density scores
The program density-fitness calculates electron density metrics,
for main- (includes Cβ atom) and side-chain atoms of individual residues.
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For this calculation, the program uses the structure model in either PDB
or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps.
If these maps are not readily available, the MTZ file and model can be used
to calculate maps clipper. Density-fitness support both X-ray and electron
diffraction data.
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This program is essentially a reimplementation of edstats, a program
available from the CCP4 suite. However, the output now contains only the
RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm
and OPIA and no longer requires pre-calculated map coefficients.
Description-md5: a0d73a3885bbe1e21b3bb9575d5b6f5c