Complete Guide: Installing ggd-utils on Ubuntu 21.04 (Hirsute Hippo) 2024

1. Install "ggd-utils" package

This guide covers the steps necessary to install ggd-utils on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ggd-utils
            
                    
    
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2. Uninstall "ggd-utils" package

This guide covers the steps necessary to uninstall ggd-utils on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                ggd-utils
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ggd-utils package on Ubuntu 21.04 (Hirsute Hippo)

Package: ggd-utils
Architecture: amd64
Version: 0.0.7+ds-3
Built-Using: golang-1.15 (= 1.15.4-1ubuntu1), golang-github-alexflint-go-arg (= 1.3.0+ds-2), golang-github-alexflint-go-scalar (= 1.0.0+ds-2), golang-github-biogo-hts (= 1.1.0+dfsg1-2), golang-github-klauspost-compress (= 1.10.11-1), golang-github-klauspost-pgzip (= 1.2.1-1), golang-github-shenwei356-xopen (= 0.0~git20181203.f4f16dd-2)
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 5280
Depends: libc6 (>= 2.32)
Filename: pool/universe/g/ggd-utils/ggd-utils_0.0.7+ds-3_amd64.deb
Size: 1726668
MD5sum: ec1335c9e8a38288d762b331139f6060
SHA1: abc97ca936e5dd56385023a1853a32d8cd870716
SHA256: e05656ba77c2d4cbfdc0ee907927454ff405e719a1161b730597e09c22533dcd
SHA512: 82ae8f858afa8f878d9dd5594fb08187c62dc276f3f590aecc0b3d6785ab5aacab52e564e3034d961d745306dbcd77d2fae73e31a36f59a56172e9639637dbc0
Homepage: https://github.com/gogetdata/ggd-utils
Description-en: programs for use in ggd
Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes
Description-md5: c234fa6dad08b4131924c3112fb192b5