How to Install and Uninstall gsort Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "gsort" package

In this section, we are going to explain the necessary steps to install gsort on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gsort
            
                    
    
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2. Uninstall "gsort" package

Please follow the guidance below to uninstall gsort on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                gsort
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gsort package on Ubuntu 21.10 (Impish Indri)

Package: gsort
Architecture: amd64
Version: 0.1.4-3
Built-Using: ggd-utils (= 0.0.7+ds-3), golang-1.15 (= 1.15.4-1ubuntu1), golang-github-alexflint-go-arg (= 1.3.0+ds-2), golang-github-alexflint-go-scalar (= 1.0.0+ds-2), golang-github-klauspost-compress (= 1.11.3-1), golang-github-klauspost-pgzip (= 1.2.5-1), golang-github-pkg-errors (= 0.9.1-1), golang-github-shenwei356-xopen (= 0.0~git20181203.f4f16dd-2)
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 5385
Depends: libc6 (>= 2.32)
Filename: pool/universe/g/gsort/gsort_0.1.4-3_amd64.deb
Size: 1745376
MD5sum: 9b8f5a7e50843c4d26bfea16167a16c9
SHA1: 98fc3261bc3741064116d7b04cc27efb43ef40a6
SHA256: 7156b6cd9c691d3ecf49f9ae4e6c57d0fd4c3a4341dba7fad235747277ae57f7
SHA512: 0332820e7146dc8d7089bea93c5110693ac018d6cfc2b8eaabb24ecb3e6642f741853f86a5fa0c2c5236157ce7f25aa320e51b1e6199dfc4f7f19879a2271ee4
Homepage: https://github.com/brentp/gsort
Description-en: sort genomic data
gsort is a tool to sort genomic files according to a genomefile.
For example, to sort VCF to have order:
X, Y, 2, 1, 3, ... and the header needs to be kept at the top.
.
As a more likely example, if a file nneds to be sorted to match GATK
order (1 ... X, Y, MT) which is not possible with any other sorting
tool. With gsort one can simply place MT as the last chrom in the
".genome" file.
.
It will also be useful for getting files ready for use in bedtools.
Description-md5: 196776f6a1c66130f7f92d0e256ca1b3