How to Install and Uninstall kallisto Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 18,2024

1. Install "kallisto" package

Please follow the guidance below to install kallisto on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                kallisto
            
                    
    
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2. Uninstall "kallisto" package

Please follow the guidelines below to uninstall kallisto on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                kallisto
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the kallisto package on Ubuntu 21.10 (Impish Indri)

Package: kallisto
Architecture: amd64
Version: 0.46.2+dfsg-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 622
Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libhts3 (>= 1.10), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4)
Filename: pool/universe/k/kallisto/kallisto_0.46.2+dfsg-3_amd64.deb
Size: 223224
MD5sum: 804d20806bb0028e8f80213e44117747
SHA1: 03de29713b16b0f6de2b8f15c68c943abc75be3d
SHA256: 868d983d6ef3bb932ee5d3b51db011cd50744822722af864e326094661aa2bae
SHA512: 9b90b4795c2733ca56178da45da68403048144f995130acf063f4803ac882ee349ff40a9a084988b147e35526b62c1a699010df948bb25c9d28eac5ae9d91a37
Homepage: https://pachterlab.github.io/kallisto
Description-en: near-optimal RNA-Seq quantification
Kallisto is a program for quantifying abundances of transcripts from
RNA-Seq data, or more generally of target sequences using high-throughput
sequencing reads. It is based on the novel idea of pseudoalignment for
rapidly determining the compatibility of reads with targets, without the
need for alignment. On benchmarks with standard RNA-Seq data, kallisto
can quantify 30 million human reads in less than 3 minutes on a Mac
desktop computer using only the read sequences and a transcriptome index
that itself takes less than 10 minutes to build. Pseudoalignment of
reads preserves the key information needed for quantification, and
kallisto is therefore not only fast, but also as accurate than existing
quantification tools. In fact, because the pseudoalignment procedure is
robust to errors in the reads, in many benchmarks kallisto significantly
outperforms existing tools.
Description-md5: 9d173d648de2d1e7d239c362fbb1a5ae