How to Install and Uninstall kma Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "kma" package

This guide covers the steps necessary to install kma on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                kma
            
                    
    
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2. Uninstall "kma" package

Please follow the guidance below to uninstall kma on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                kma
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the kma package on Ubuntu 21.10 (Impish Indri)

Package: kma
Architecture: amd64
Version: 1.3.10-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 495
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4)
Filename: pool/universe/k/kma/kma_1.3.10-1_amd64.deb
Size: 183532
MD5sum: 83a05a3936e0d2a4bdc149c8c8699a8f
SHA1: 32947d3bcd8f4aa49d375727a165ac4e70d39f4d
SHA256: 16aeb7c2b7a084f96e86ef372226140cb1be09644821a7bcacc25261ea1fb4eb
SHA512: dbea5ec09b7ecd6375b855fe03b392e0bf825bfb13e5a2d904dab48fb09d9c9ebb4a2b3c59695ec13ffea9d9874468380b96b99fd0e317a0fa90de7287fb109e
Homepage: https://bitbucket.org/genomicepidemiology/kma
Description-en: mapping genomic sequences to raw reads directly against redundant databases
KMA is mapping a method designed to map raw reads directly against
redundant databases, in an ultra-fast manner using seed and extend. KMA
is particularly good at aligning high quality reads against highly
redundant databases, where unique matches often does not exist. It works
for long low quality reads as well, such as those from Nanopore. Non-
unique matches are resolved using the "ConClave" sorting scheme, and a
consensus sequence are outputtet in addition to other common attributes.
Description-md5: 2096f8927a2b82fc955d8fbdca77c1aa