How to Install and Uninstall lefse Package on Ubuntu 21.10 (Impish Indri)

Last updated: April 29,2024

1. Install "lefse" package

Please follow the step by step instructions below to install lefse on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                lefse
            
                    
    
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2. Uninstall "lefse" package

This is a short guide on how to uninstall lefse on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                lefse
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the lefse package on Ubuntu 21.10 (Impish Indri)

Package: lefse
Architecture: all
Version: 1.0.8-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 272
Depends: python3:any, python3-rpy2, r-cran-coin, python3-matplotlib
Filename: pool/universe/l/lefse/lefse_1.0.8-3_all.deb
Size: 55224
MD5sum: 5ca7b72c5689c70f28be767188077d05
SHA1: 80a976cbc6642a6e30a62704ad360686481130bf
SHA256: 554824f33e6832f930c817ff2d6a60b013f08cfdccca744058adda8d3a23888f
SHA512: 61176e522c471854f6a026b8e1e18f47f3a3fd2fe1c9c72b30d9088b4e5d7319f2a5e72d654989573bcae4f0f666f7be447d5384c5da64f32492819a47bf305e
Homepage: https://bitbucket.org/biobakery/biobakery/wiki/lefse
Description-en: determine features of organisms, clades, taxonomic units, genes
LEfSe (Linear discriminant analysis Effect Size) determines the features
(organisms, clades, operational taxonomic units, genes, or functions)
most likely to explain differences between classes by coupling standard
tests for statistical significance with additional tests encoding
biological consistency and effect relevance.
Description-md5: 99a95edfdd51afd5bb9d222117f5342b