How to Install and Uninstall maffilter-examples Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 02,2024

1. Install "maffilter-examples" package

This guide covers the steps necessary to install maffilter-examples on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                maffilter-examples
            
                    
    
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2. Uninstall "maffilter-examples" package

This tutorial shows how to uninstall maffilter-examples on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                maffilter-examples
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the maffilter-examples package on Ubuntu 21.10 (Impish Indri)

Package: maffilter-examples
Architecture: all
Version: 1.3.1+dfsg-2build1
Priority: optional
Section: universe/science
Source: maffilter
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 78841
Enhances: maffilter
Filename: pool/universe/m/maffilter/maffilter-examples_1.3.1+dfsg-2build1_all.deb
Size: 79214044
MD5sum: 2a2003995341930bef3136a4f32e462e
SHA1: 596e3c6b76fa2b0b9ff44ed6591b6b054788246a
SHA256: 8e0c83d3c97a7f66557c19b068d3ee6f78252b14a71ae89d8da77f3d9019d637
SHA512: 586c83413064563c84090f92dbfce3cd97c5aff6e5bb9467ba98c35699f1b715a88af9e4e80966364f817e6754f20fef528db39789c4dabf40e3e9209026010a
Homepage: https://jydu.github.io/maffilter/
Description-en: process genome alignment in the Multiple Alignment Format (example data)
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
.
This package provides example data for maffilter.
Description-md5: 5efac72cfe50192f17c31d0b810d8fbe