How to Install and Uninstall mapsembler2 Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 19,2024

1. Install "mapsembler2" package

In this section, we are going to explain the necessary steps to install mapsembler2 on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                mapsembler2
            
                    
    
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2. Uninstall "mapsembler2" package

This guide covers the steps necessary to uninstall mapsembler2 on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                mapsembler2
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mapsembler2 package on Ubuntu 21.10 (Impish Indri)

Package: mapsembler2
Architecture: amd64
Version: 2.2.4+dfsg1-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1302
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), bc
Filename: pool/universe/m/mapsembler2/mapsembler2_2.2.4+dfsg1-3_amd64.deb
Size: 725116
MD5sum: 8ae98a88afe279ef73e832be4d696d4e
SHA1: ccf3d02d840ad629e237a0120d17a0295e892514
SHA256: 770b6e41ab6400d7b403f74b1f0c14f82935b404a54083e820b01d134b9a10a1
SHA512: 4fb1a6a813e8a2f8e0078d2b86b71e4a007204a3f7ba9fbd97a04aae51af2c494a88b6a8a4d404e6e6ccbdaf8533cbda73413cf4e4620ff7abdc0cafc6660db1
Homepage: http://colibread.inria.fr/mapsembler2/
Description-en: bioinformatics targeted assembly software
Mapsembler2 is a targeted assembly software.
It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not)
and a set of input sequences (starters).
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It first determines if each starter is read-coherent, e.g. whether reads
confirm the presence of each starter in the original sequence.
Then for each read-coherent starter, Mapsembler2 outputs its sequence
neighborhood as a linear sequence or as a graph, depending on the user choice.
.
Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de
Bruijn graph assembly where read-coherence was not enforced.
- Checks if a gene (input as starter) has an homolog in a set of reads
- Checks if a known enzyme is present in a metagenomic NGS read set.
- Enrich unmappable reads by extending them, possibly making them mappable
- Checks what happens at the extremities of a contig
- Remove contaminants or symbiont reads from a read set
Description-md5: a2484fb65a6be17eb178830b19618b72