How to Install and Uninstall mecat2 Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 05,2024

1. Install "mecat2" package

In this section, we are going to explain the necessary steps to install mecat2 on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                mecat2
            
                    
    
    Copied

2. Uninstall "mecat2" package

Please follow the guidelines below to uninstall mecat2 on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                mecat2
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the mecat2 package on Ubuntu 21.10 (Impish Indri)

Package: mecat2
Architecture: amd64
Version: 0.0+git20200428.f54c542+ds-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 4200
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), perl:any
Filename: pool/universe/m/mecat2/mecat2_0.0+git20200428.f54c542+ds-3_amd64.deb
Size: 781568
MD5sum: 85f3ada458f1bb0d43a503049e25d715
SHA1: 29a5f0b9a8de2a5bd863f1a4ce8351e30259391f
SHA256: 9f6e678fdce2790d0b46ac738f7ba17b724e5167b15305ad26bb71e1e0922f98
SHA512: f529b215a73e2ffbaf8f713ae229a5dbd041a089924747fc5587317a6d9df2cc0b6ac5e7295a8eb3182b2074fc3a9840bd5083597b44da092d89c2e7e8c60605
Homepage: https://github.com/xiaochuanle/MECAT2
Description-en: ultra-fast and accurate de novo assembly tools for SMRT reads
An improved version of MECAT. It is an ultra-fast and accurate mapping
and error correcting de novo assembly tools for single molecula
sequencing (SMRT) reads. MECAT2 consists of the following three modules:
1. mecat2map: a fast and accurate alignment tool for SMRT reads.
2. mecat2cns: correct noisy reads based on their pairwise overlaps.
3. fsa: a string graph based assembly tool.
Description-md5: 11ac96e389213bbb2d085e80daf45b2b