How to Install and Uninstall metaphlan2-data Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "metaphlan2-data" package

This is a short guide on how to install metaphlan2-data on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                metaphlan2-data
            
                    
    
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2. Uninstall "metaphlan2-data" package

In this section, we are going to explain the necessary steps to uninstall metaphlan2-data on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                metaphlan2-data
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the metaphlan2-data package on Ubuntu 21.10 (Impish Indri)

Package: metaphlan2-data
Architecture: all
Version: 2.6.0+ds-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 753107
Depends: debconf (>= 0.5) | debconf-2.0, bowtie2
Filename: pool/universe/m/metaphlan2-data/metaphlan2-data_2.6.0+ds-4_all.deb
Size: 204323800
MD5sum: 848217238a5fce84f971cfa2ea4e182c
SHA1: d2fc201fd4e72a1f577c4ecedc09e1ed895b5783
SHA256: 17716701b398a67347256692bb0b89ff0ced9eaa1b25b1cb74197795d422dbed
SHA512: 9e40e9711464c1d27d43cce9276828aeefee4011c864926e50cd16e5e6682fd4f28b7000466c20eeac1c5e6725645d6415e8473a9447a1ba3a6fa0bb5c315b84
Homepage: https://bitbucket.org/biobakery/metaphlan2
Description-en: data package for Metagenomic Phylogenetic Analysis
MetaPhlAn is a computational tool for profiling the composition of
microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from
metagenomic shotgun sequencing data with species level resolution. From
version 2.0, MetaPhlAn is also able to identify specific strains (in the
not-so-frequent cases in which the sample contains a previously
sequenced strains) and to track strains across samples for all species.
.
MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the
marker information file can be found at src/utils/markers_info.txt.bz2
or here) identified from ~17,000 reference genomes (~13,500 bacterial
and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:
.
* unambiguous taxonomic assignments;
* accurate estimation of organismal relative abundance;
* species-level resolution for bacteria, archaea, eukaryotes and
viruses;
* strain identification and tracking
* orders of magnitude speedups compared to existing methods.
* metagenomic strain-level population genomics
.
This package contains the data for metaphlan2.
Description-md5: f0775409e41de9fba49cda4590c73ce4