How to Install and Uninstall mindthegap-examples Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 06,2024

1. Install "mindthegap-examples" package

Learn how to install mindthegap-examples on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                mindthegap-examples
            
                    
    
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2. Uninstall "mindthegap-examples" package

This tutorial shows how to uninstall mindthegap-examples on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                mindthegap-examples
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mindthegap-examples package on Ubuntu 21.10 (Impish Indri)

Package: mindthegap-examples
Architecture: all
Version: 2.2.2-2
Priority: optional
Section: universe/science
Source: mindthegap
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 696
Depends: python3, bsdextrautils | bsdmainutils (<< 12.1.1~)
Recommends: mindthegap
Filename: pool/universe/m/mindthegap/mindthegap-examples_2.2.2-2_all.deb
Size: 611528
MD5sum: 3ee562674d774751d497f50cb056bf7d
SHA1: a336284e9497390d2e03adc8a77d9bf0b5cc42b4
SHA256: bd42ff7066b006c450b37d3666dbcdbaf9475ed47b65b21b5eeb3abe9c9b7051
SHA512: c28a3528b4aabc56a73b665dde836133bf4c9d1552560a170467eb7b8daf99f8db8f26e97d064984c5280407a68369e0ff263a3125a7c21dbceff8b8ab553785
Homepage: https://github.com/GATB/MindTheGap
Description-en: optional scripts and example resources for mindthegap
Designed to call insertions of any size, whether they are novel or
duplicated, homozygous or heterozygous in the donor genome. it takes
as input a set of reads and a reference genome. It outputs two sets
of FASTA sequences: one is the set of breakpoints of detection
insertion sites, the other is the set of assembled insertions for
each breakpoint. MindTheGap can also be used as a genome assembly
finishing tool. It can fill the gap between a set of input contigs
without any a priori on their relative order and orientation. It
outputs the results in gfa file. Please note that this package is
meant to accommodate the mindthegap package and only acts as example
to how this package can be utilised.
Description-md5: 96e8212c0c82386e29033f5b1866577d