How to Install and Uninstall msxpertsuite Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 21,2024

1. Install "msxpertsuite" package

This is a short guide on how to install msxpertsuite on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                msxpertsuite
            
                    
    
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2. Uninstall "msxpertsuite" package

Please follow the step by step instructions below to uninstall msxpertsuite on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                msxpertsuite
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the msxpertsuite package on Ubuntu 21.10 (Impish Indri)

Package: msxpertsuite
Architecture: amd64
Version: 5.8.9-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: The Debichem Group
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 48
Depends: msxpertsuite-massxpert (>= 5.8.9), msxpertsuite-massxpert (<< 5.8.9A~), msxpertsuite-minexpert (>= 5.8.9), msxpertsuite-minexpert (<< 5.8.9A~)
Suggests: msxpertsuite-doc
Filename: pool/universe/m/msxpertsuite/msxpertsuite_5.8.9-1_amd64.deb
Size: 9748
MD5sum: 6a87f23b0ea429585615345f333c12ad
SHA1: cd4e1f457bb460d8055b0b293b1171c747cda008
SHA256: 5910222cc7b68069bac9f8a88a8bf4a62a0a619a2dfa11c0bcb44a09d615f8e9
SHA512: f396d698e3d76d750584e434a80567ae5e8d3731d1bb1091841c3c9755a62556807bf30d7f2f3a3947a55a3c16174ce20f20a5d373e7d4661ca068097895fbe1
Homepage: http://www.msxpertsuite.org/
Description-en: mass spectrometry software suite - metapackage
msXpertSuite provides programs to model linear (bio-) polymer
chemistries, simulate mass spectral data, analyse and data-mine mass.
It is the successor of GNU polyXmass, first, and then of massXpert.
.
The massXpert and mineXpert programs allow the following:
.
massXpert:
- making brand new polymer chemistry definitions;
- using the definitions to perform easy calculations in a desktop
calculator-like manner;
- performing sophisticated polymer sequence editing and simulations;
- perform m/z list comparisons;
.
Chemical simulations encompass cleavage (either chemical or
enzymatic), gas-phase fragmentations, chemical modification of any
monomer in the polymer sequence, cross-linking of monomers in the
sequence, arbitrary mass searches, calculation of the isotopic
pattern...
.
mineXpert:
- Open mass spectrometry data files (mzML, mzXML, asc, xy, ...);
- Calculate and display the TIC chromatogram;
- For mobility data, calculate and display a mz=f(dt) color map;
- Integrate the data from the TIC chromatogram or color map
- to mass spectrum;
- to drift spectrum;
- back to TIC chromatogram (XIC chromatogram);
- reverse operations;
- to single TIC intensity value
(for mass spectral intensity comparisons);
- Model centroids peaks into mass spectra using either the
Gaussian model or the Lorentzian model;
- Export the data to text files;
- Slice a big initial file into smaller chunks for easier mining;
- Define how mining activity is recorded on disk for later use;
- Convert mzML files into a private (albeit open) mass spectrometry
format that allows better performance (based on SQLite3).
.
This package depends on both massXpert and mineXpert packages and thus will
install both of them. To install only one of the packages, install the
corresponding msxpertsuite-massxpert or msxpertsuite-minexpert package.
Description-md5: 332351d0367a16f8c219250043610692