How to Install and Uninstall ngmlr Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 23,2024

1. Install "ngmlr" package

In this section, we are going to explain the necessary steps to install ngmlr on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ngmlr
            
                    
    
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2. Uninstall "ngmlr" package

This guide let you learn how to uninstall ngmlr on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                ngmlr
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ngmlr package on Ubuntu 21.10 (Impish Indri)

Package: ngmlr
Architecture: amd64
Version: 0.2.7+dfsg-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1146
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libssw0 (>= 1.1), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4)
Filename: pool/universe/n/ngmlr/ngmlr_0.2.7+dfsg-4_amd64.deb
Size: 680344
MD5sum: 9a4677d3f12b94217418d57cb27d3551
SHA1: 46776ab517fae9e11c7378fb5c68dadcbe1f3dd8
SHA256: 6b6c75794a73526effa66b1dbb49f991b646369f4af1de4255d3fd21a129116d
SHA512: 3c79a93f53ebcf10089a55d3138759dad07d5faf509a68947b46a8c56585f078fa2e4a99cde0aec462da96f7611537a11447f41d7f4ab964cce11e125b05ab04
Homepage: https://github.com/philres/ngmlr
Description-en: CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or
Oxford Nanopore to (large) reference genomes. It was designed to quickly
and correctly align the reads, including those spanning (complex)
structural variations. Ngmlr uses an SV aware k-mer search to find
approximate mapping locations for a read and then a banded Smith-
Waterman alignment algorithm to compute the final alignment. Ngmlr uses
a convex gap cost model that penalizes gap extensions for longer gaps
less than for shorter ones to compute precise alignments.
Description-md5: 123cfd4d1fd08d8ff1fa4fa20510d1b6