How to Install and Uninstall optimir Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 24,2024

1. Install "optimir" package

Here is a brief guide to show you how to install optimir on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                optimir
            
                    
    
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2. Uninstall "optimir" package

This is a short guide on how to uninstall optimir on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                optimir
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the optimir package on Ubuntu 21.10 (Impish Indri)

Package: optimir
Architecture: all
Version: 1.0-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 7404
Depends: python3-biopython, python3-pysam, python3:any, bowtie2, cutadapt, samtools
Recommends: r-cran-gridextra, r-cran-ggplot2
Filename: pool/universe/o/optimir/optimir_1.0-3_all.deb
Size: 1028108
MD5sum: 78ee3ebca28a2ce28fc4555f4feda844
SHA1: 7bf5e46c2c7b22cefe0cdc3a404adb2f00eee921
SHA256: 17ae651a1b716c5393a693c960a09b53d2078c5b1322324b41e7d0992973a9d8
SHA512: 780db666a4c629efa33f5ef4b6e411a196b8e04618990826d60e4303a05596f7d262f21a13206684a7a110f0a1e647f295aca579b875ec64a1ada6610df13a69
Homepage: https://github.com/FlorianThibord/OptimiR
Description-en: Integrating genetic variations in miRNA alignment
OptimiR is a miRSeq data alignment workflow. It integrates genetic information
to assess the impact of variants on miRNA expression.
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OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs,
isomiRs and polymiRs from miRSeq data, & study the impact of genetic
variations on polymiRs' expression.
Description-md5: 759e6ff9eaeea6644852b82160c2085c