How to Install and Uninstall pal2nal Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 19,2024

1. Install "pal2nal" package

This guide let you learn how to install pal2nal on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                pal2nal
            
                    
    
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2. Uninstall "pal2nal" package

Please follow the step by step instructions below to uninstall pal2nal on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                pal2nal
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pal2nal package on Ubuntu 21.10 (Impish Indri)

Package: pal2nal
Architecture: all
Version: 14.1-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 91
Recommends: paml
Filename: pool/universe/p/pal2nal/pal2nal_14.1-3_all.deb
Size: 17800
MD5sum: c65448fca9f28b90ab6bbac3405429ab
SHA1: eb8352b91c4663f0be659b29bb09ba4cba5c7aa8
SHA256: 01f911c3785d194c49a50ad430a4f293843222d0a1ad160d6b2b5ea5378860b5
SHA512: 6b1b4da659ab9f164490219338f33a2b25aea6309c93f2ca77ef78f0e6aff9feb7e99fac0e51f7dd48990cacc0c4ea0ebed297e3b9354bfdbbe36e70c0d359cd
Homepage: http://www.bork.embl.de/pal2nal
Description-en: converts proteins to genomic DNA alignment
PAL2NAL is a program that converts a multiple sequence alignment
of proteins and the corresponding DNA (or mRNA) sequences into
a codon-based DNA alignment. The program automatically assigns
the corresponding codon sequence even if the input DNA sequence
has mismatches with the input protein sequence, or contains UTRs,
polyA tails. It can also deal with frame shifts in the input
alignment, which is suitable for the analysis of pseudogenes.
The resulting codon-based DNA alignment can further be subjected
to the calculation of synonymous (Ks) and non-synonymous (Ka)
substitution rates.
Description-md5: 25753df4c3a4fc9a63c6a6f3e62be437