How to Install and Uninstall phyx Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 21,2024

1. Install "phyx" package

This guide covers the steps necessary to install phyx on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                phyx
            
                    
    
    Copied

2. Uninstall "phyx" package

This guide covers the steps necessary to uninstall phyx on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                phyx
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the phyx package on Ubuntu 21.10 (Impish Indri)

Package: phyx
Architecture: amd64
Version: 1.01+ds-2build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 17853
Depends: libarmadillo10 (>= 1:10.1.0+dfsg), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libnlopt0 (>= 2.6.1), libstdc++6 (>= 9), python3
Filename: pool/universe/p/phyx/phyx_1.01+ds-2build1_amd64.deb
Size: 1912524
MD5sum: f9843ced5c5c3a26d4a0db948153cca6
SHA1: a0b9c64ef70ed959061b968cebc9da7d910aa435
SHA256: 7cc2abda6f7bd40ccf019009b86dba2af5f5d963858e953e51bf40dc6e31193c
SHA512: 284189ce3de375277551abc13a00224ebb374aa0df170e343dd795f65294db003be3811cc9d1ddce0d8932341b3db82affb1ec3e86f2dc602fd970e477cd69d3
Homepage: https://github.com/FePhyFoFum/phyx
Description-en: UNIX-style phylogenetic analyses on trees and sequences
phyx provides a convenient, lightweight and inclusive toolkit consisting of
programs spanning the wide breadth of programs utilized by researchers
performing phylogenomic analyses. Modeled after Unix/GNU/Linux command
line tools, individual programs perform a single task and operate on
standard I/O streams. A result of this stream-centric approach is that, for
most programs, only a single sequence or tree is in memory at any moment.
Thus, large datasets can be processed with minimal memory requirements.
phyx’s ever-growing complement of programs consists of over 35 programs
focused on exploring, manipulating, analyzing and simulating phylogenetic
objects (alignments, trees and MCMC logs). As with standard Unix command
line tools, these programs can be piped (together with non-phyx tools),
allowing the easy construction of efficient analytical pipelines.
Description-md5: 7d8e820c88863c5396bb93a7ab61d456