Complete Guide: Installing pique on Ubuntu 21.10 (Impish Indri) 2024

1. Install "pique" package

Learn how to install pique on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pique
            
                    
    
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2. Uninstall "pique" package

Please follow the guidance below to uninstall pique on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                pique
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pique package on Ubuntu 21.10 (Impish Indri)

Package: pique
Architecture: all
Version: 1.0-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 86
Depends: perl:any, r-base-core, emmax, plink, eigensoft, libreadonly-perl, libparallel-forkmanager-perl, libfile-slurp-perl, r-cran-getopt, r-cran-forecast, r-cran-optparse, r-cran-uroot
Filename: pool/universe/p/pique/pique_1.0-2_all.deb
Size: 20080
MD5sum: c65b54e360d403698b7c0e7f8c7f4d28
SHA1: 6c66acf8cb4485f510b22ce817f940b017b45ce0
SHA256: a777238ede0de1f7fa706500de7a27eac13aa59253c0376b8d1a33a5156df2dc
SHA512: 439ee67af887f97888fec7ebe302b138061c2de6108d594f13eacfd2e246d26745e479fea78ddd191ea9adb381a70b91449ac7d4c94a86e2fd44e4f3e6bb4c8f
Homepage: https://github.com/tony-travis/PIQUE/
Description-en: software pipeline for performing genome wide association studies
PIQUE is a software pipeline for performing genome wide association
studies (GWAS). The main function of PIQUE is to provide ‘convenience’
wrappers that allow users to perform GWAS using the popular program
EMMAX (Kang et al., 2010) without the need to be familiar with all of
the software tools used to generate the required EMMAX input files.
PIQUE will also perform a number of quality control steps prior to
running EMMAX, ensuring that the various input data files are in the
correct format. PIQUE proceeds in two main stages although there are
multiple entry and exit points from which the pipeline can be run. The
first stage consists of running the “pique-input” program, which can
read genotype and phenotype information in several different formats and
generates all the necessary input files required to run EMMAX. The
second step in the pipeline uses the “pique-run” program to actually run
EMMAX using the files generated by “pique-input” (or pre-existing
user-supplied input files) to perform the GWAS and output the analysis
summary files.
Description-md5: 64187f10cf1817dc592e61051ebf4f51