How to Install and Uninstall pizzly Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 22,2024

1. Install "pizzly" package

In this section, we are going to explain the necessary steps to install pizzly on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                pizzly
            
                    
    
    Copied

2. Uninstall "pizzly" package

Please follow the instructions below to uninstall pizzly on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                pizzly
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the pizzly package on Ubuntu 21.10 (Impish Indri)

Package: pizzly
Architecture: amd64
Version: 0.37.3+ds-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 888
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), python3, kallisto
Recommends: python3-h5py
Filename: pool/universe/p/pizzly/pizzly_0.37.3+ds-5_amd64.deb
Size: 295188
MD5sum: 99d197cbb571e09cd88deff532c885eb
SHA1: 1bd1964a9e8ade64c440623c9a60e9cd8dbb7cf5
SHA256: 5001105f45c862e5de82c966470cad49d6098d1c5c2e9a69a3b36a51ef16d205
SHA512: 2ced2e0e05299e9954086bd66321efef6861d528dd67e1bf20741a529c8e9b1fe1a76a1d5ff2482b3a85e9d8bd090e2a4747f87dc48d1e0f9297d5269052c5b9
Homepage: https://github.com/pmelsted/pizzly
Description-en: Identifies gene fusions in RNA sequencing data
For the interpretation of the transcriptome (the abundance
and sequence of RNA) of tomour cells one is particularly
interested in transcripts that cannot be mapped to single
genes but that are seen to be fused as parts from two genes.
Likely eplanations are chromosomal translocations.
.
Pizzly can identify novel such peculiarities, building on
interpretations on variable splicing by the tool kallisto.
Both tools are elements of the bcbio workflow.
Description-md5: 723b171e9f8a4d57160db0ec1824e0c4