Complete Guide: Installing pycoqc on Ubuntu 21.10 (Impish Indri) 2024

1. Install "pycoqc" package

Here is a brief guide to show you how to install pycoqc on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pycoqc
            
                    
    
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2. Uninstall "pycoqc" package

This tutorial shows how to uninstall pycoqc on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                pycoqc
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pycoqc package on Ubuntu 21.10 (Impish Indri)

Package: pycoqc
Architecture: all
Version: 2.5.2+dfsg-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 194
Depends: python3-h5py-serial, python3-jinja2, python3-numpy, python3-pandas, python3-plotly (>= 4.1.0), python3-pysam, python3-scipy, python3-tqdm, python3:any, python3-h5py
Filename: pool/universe/p/pycoqc/pycoqc_2.5.2+dfsg-1_all.deb
Size: 35848
MD5sum: 86df893b35535793dc2ca2bde0c6a798
SHA1: bf25ec26326cb5df9d3f2731881a19932aeea931
SHA256: afbf9e55ab86b464cc1a35b105fe58e8dc1d6cbddaf61061f1c0dc96c259b4b7
SHA512: 6da99acf1e0ea5ae2a38de90dad680b952d65914ba7e2396ddec59e1635db701c8231f375083e5f5ce81be412d86c5199ac52d193308b9ea6456a9ebd5826ef8
Homepage: https://github.com/a-slide/pycoQC
Description-en: computes metrics and generates Interactive QC plots
PycoQC computes metrics and generates interactive QC plots for Oxford
Nanopore technologies sequencing data
.
PycoQC relies on the sequencing_summary.txt file generated by Albacore
and Guppy, but if needed it can also generates a summary file from
basecalled fast5 files. The package supports 1D and 1D2 runs generated
with Minion, Gridion and Promethion devices and basecalled with Albacore
1.2.1+ or Guppy 2.1.3+
Description-md5: 311c31394d7f1c34ec5bf3baa30e71f3