How to Install and Uninstall python3-biom-format Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 15,2024

1. Install "python3-biom-format" package

Please follow the steps below to install python3-biom-format on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                python3-biom-format
            
                    
    
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2. Uninstall "python3-biom-format" package

Please follow the instructions below to uninstall python3-biom-format on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                python3-biom-format
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python3-biom-format package on Ubuntu 21.10 (Impish Indri)

Package: python3-biom-format
Architecture: amd64
Version: 2.1.10-1build1
Priority: optional
Section: universe/python
Source: python-biom-format
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 735
Provides: biom-format-tools
Depends: python3-h5py, python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9, cython3, python3 (<< 3.10), python3 (>= 3.9~), python3-click, python3-future, python3-h5py-serial, python3-pandas, python3-scipy, python3-six (>= 1.10.0), python3:any, libc6 (>= 2.4)
Suggests: python-biom-format-doc
Breaks: biom-format-tools (<< 2.1.7+dfsg-3)
Replaces: biom-format-tools (<< 2.1.7+dfsg-3)
Filename: pool/universe/p/python-biom-format/python3-biom-format_2.1.10-1build1_amd64.deb
Size: 119464
MD5sum: 2642602d4964e2994cfda39138f20985
SHA1: 863960d64925850afdccc4996b20b0857e9357a8
SHA256: b8f7b6ad0de1aaf1798898c0b596e327026af98f4197227ba952c13664d9895f
SHA512: c5888a3b1eb497292a9ad97fc61d598de1f364cc8462110221cd6194c4fb398516106e41ec27ce0b39bb34b8aed32dde802decc17bb881a247801743a4ac119c
Homepage: https://biom-format.org/
Description-en: Biological Observation Matrix (BIOM) format (Python 3)
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
.
This package provides the BIOM format library for the Python 3 interpreter.
Description-md5: a8e1165fb97cc05bc8c23295225341cd