How to Install and Uninstall python3-bx Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 24,2024

1. Install "python3-bx" package

This is a short guide on how to install python3-bx on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                python3-bx
            
                    
    
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2. Uninstall "python3-bx" package

Please follow the steps below to uninstall python3-bx on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                python3-bx
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python3-bx package on Ubuntu 21.10 (Impish Indri)

Package: python3-bx
Architecture: amd64
Version: 0.8.9-1
Priority: optional
Section: universe/python
Source: python-bx
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 4667
Provides: python3-bx-tools
Depends: python3-lzo, libc6 (>= 2.14), zlib1g (>= 1:1.1.4), python3 (<< 3.10), python3 (>= 3.9~), python3-numpy, python3-six (>= 1.13.0), python3:any
Breaks: python3-bx-tools
Replaces: python3-bx-tools
Filename: pool/universe/p/python-bx/python3-bx_0.8.9-1_amd64.deb
Size: 1916624
MD5sum: 624e1c4611e6a568d4ae51c044f46463
SHA1: 6902996ab7ba157b16450546f4a04d318ff5b4f5
SHA256: 01dbc4bc941b0ddb981a21bb93dda33d5843dc6d7bfae856d5b3b881d1326c27
SHA512: ca4f94ab2787b8c76de8d48e3907b6a93b6fdf4203cc778e7b86a5f51ae166b7db9179f7b8c8ef16becc3eb41ecbfdcf2b7bf7eb8308ca725619dd848bb8b680
Homepage: https://github.com/bxlab/bx-python
Description-en: library to manage genomic data and its alignment
The bx-python project is a Python3 library and associated set of scripts to
allow for rapid implementation of genome scale analyses. The library contains
a variety of useful modules, but the particular strengths are:
* Classes for reading and working with genome-scale multiple local
alignments (in MAF, AXT, and LAV formats)
* Generic data structure for indexing on disk files that contain blocks of
data associated with intervals on various sequences (used, for example, to
provide random access to individual alignments in huge files; optimized
for use over network filesystems)
* Data structures for working with intervals on sequences
* "Binned bitsets" which act just like chromosome sized bit arrays, but
lazily allocate regions and allow large blocks of all set or all unset
bits to be stored compactly
* "Intersecter" for performing fast intersection tests that preserve both
query and target intervals and associated annotation
Description-md5: 67d503eba4b89cb2b658656d4c7560a1