How to Install and Uninstall ruby-rgfa Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 23,2024

1. Install "ruby-rgfa" package

Please follow the instructions below to install ruby-rgfa on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ruby-rgfa
            
                    
    
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2. Uninstall "ruby-rgfa" package

Please follow the guidelines below to uninstall ruby-rgfa on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                ruby-rgfa
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ruby-rgfa package on Ubuntu 21.10 (Impish Indri)

Package: ruby-rgfa
Architecture: all
Version: 1.3.1+dfsg-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 267
Depends: ruby | ruby-interpreter
Filename: pool/universe/r/ruby-rgfa/ruby-rgfa_1.3.1+dfsg-2_all.deb
Size: 55564
MD5sum: f0a075a2331e291900d6cc8edbcb1ffb
SHA1: 774151a92b29466089e6e16654430940d20fe1ca
SHA256: 98bc44faf167203df77e5fcbda196d4e93d3a5648325774f836eb62461a635d6
SHA512: 979610eddedb6b019542bc3106cd295e975ce450a58ec621a3e97bd617d6628f178cc16ac8705e77bf3ca3fabc96c94c40f999777e4d8cffd9083b6337b1b4b3
Homepage: https://github.com/ggonnella/rgfa
Description-en: parse, edit and write GFA format graphs in Ruby
The Graphical Fragment Assembly (GFA) format is a proposed file format
to describe the product of a genome sequence assembly process.
rgfa implements the proposed specifications for the GFA format
described under https://github.com/pmelsted/GFA-spec/blob/master/GFA-spec.md
as closely as possible.
The library allows one to create an RGFA object from a file in the GFA format
or from scratch, to enumerate the graph elements (segments, links,
containments, paths and header lines), to traverse the graph (by
traversing all links outgoing from or incoming to a segment), to search for
elements (e.g. which links connect two segments) and to manipulate the
graph (e.g. to eliminate a link or a segment or to duplicate a segment
distributing the read counts evenly on the copies).
Description-md5: cddacb20434431714e7615c358007e30
Ruby-Versions: all