How to Install and Uninstall sepp Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 25,2024

1. Install "sepp" package

Please follow the step by step instructions below to install sepp on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                sepp
            
                    
    
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2. Uninstall "sepp" package

This guide let you learn how to uninstall sepp on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                sepp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the sepp package on Ubuntu 21.10 (Impish Indri)

Package: sepp
Architecture: amd64
Version: 4.3.10+dfsg-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 549
Depends: python3-dendropy, python3:any, hmmer, pplacer, libjenkins-json-java, libgoogle-gson-java, libjson-java, libcommons-beanutils-java, libcommons-collections3-java, libcommons-lang-java, libcommons-logging-java, ncbi-blast+
Filename: pool/universe/s/sepp/sepp_4.3.10+dfsg-5_amd64.deb
Size: 182776
MD5sum: b25043528b51743b25e41f70903bc1aa
SHA1: 9b6cab232b3755919858354d1f0bb8233f5bb469
SHA256: 98aea73cbbc1947759b033789859a75bbc9437ae780a2ec8bd55c26ad057abf5
SHA512: 5cb09c20f31e1c1aca0dcd1041a55f78409d81b503aba09e69ad7cc12eeaa75445b8f1194f6186fbd72123953bca76c1fdc5b274563d5c550d582e4ab18beff1
Homepage: https://github.com/smirarab/sepp/
Description-en: phylogeny with ensembles of Hidden Markov Models
The tools SEPP and TIPP implementing these methods use ensembles of Hidden
Markov Models (HMMs) in different ways, each focusing on a different problem.
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SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the
problem of phylogenetic placement of short reads into reference
alignments and trees.
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TIPP stands for "Taxonomic Identification and Phylogenetic Profiling",
and addresses the problem of taxonomic identification and abundance
profiling of metagenomic data.
Description-md5: e4c31572ebd00d62dca308ff912646a2