How to Install and Uninstall simkamin Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 09,2024

1. Install "simkamin" package

Please follow the guidance below to install simkamin on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                simkamin
            
                    
    
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2. Uninstall "simkamin" package

Please follow the steps below to uninstall simkamin on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                simkamin
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the simkamin package on Ubuntu 21.10 (Impish Indri)

Package: simkamin
Architecture: all
Version: 1.5.3-4
Priority: optional
Section: universe/science
Source: simka
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 385
Depends: python3:any, python3
Filename: pool/universe/s/simka/simkamin_1.5.3-4_all.deb
Size: 32084
MD5sum: f4b5a3044e79dd325c56823e90245dc0
SHA1: e6c9878aa20dfb7e77eb6211e0ec318a124df780
SHA256: 701ef4a0eeed3bf49f671fc2f077b1ef38b78e76a814f1ebe85594e239f223af
SHA512: 516a9e0a34f61395c9bf712ee4ebdf59ad715aef1a6f30f91660f664bf6aa89fe79e330be40cc0465e5d48d1b06f9a217af13b25e4ebe95994386eabd884acf3
Homepage: https://github.com/GATB/simka
Description-en: approximate comparative metagenomics method dedicated to NGS datasets
Simka is a de novo comparative metagenomics tool. Simka represents each
dataset as a k-mer spectrum and compute several classical ecological
distances between them.
.
The difference with Simka stands in the fact that SimkaMin outputs
approximate (but very similar) results by subsampling the kmer space.
With this strategy, and with default parameters, SimkaMin is an order
of magnitude faster, uses 10 times less memory and 70 times less disk
than Simka.
Description-md5: 39f97c91a10d9c334eec1936e7e16bc8