How to Install and Uninstall sspace Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 22,2024

1. Install "sspace" package

This guide covers the steps necessary to install sspace on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                sspace
            
                    
    
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2. Uninstall "sspace" package

Please follow the guidance below to uninstall sspace on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                sspace
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the sspace package on Ubuntu 21.10 (Impish Indri)

Package: sspace
Architecture: all
Version: 2.1.1+dfsg-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 4651
Depends: perl:any, python3, bowtie
Filename: pool/universe/s/sspace/sspace_2.1.1+dfsg-5_all.deb
Size: 1236984
MD5sum: b179ddb5439b49191b6d3185d0fac096
SHA1: e5a48fc75d5935b9c8947ced1e5d473c33fbfd07
SHA256: f2d0e67fc8ecaaefd261da4db1354440a4bf2271b12986200d7a8d2a183223af
SHA512: 8caa37666c2440abfbec99d1344dae875e0cf2f9a742617220e127438d883435327c4d5e77b0a3b285901722b502350a4bd719c62f266976b9cb38f73af50dd2
Homepage: https://github.com/nsoranzo/sspace_basic
Description-en: scaffolding pre-assembled contigs after extension
SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension (SSPACE)
is a script able to extend and scaffold pre-assembled contigs using one or
more mate pairs or paired-end libraries, or even a combination.
.
SSPACE is built based on SSAKE. Code of SSAKE is changed to be able to
extend and scaffold pre-assembled contigs for multiple paired reads
libraries.
.
This is the free 'basic' version of SSPACE. The non-free 'standard' version is
available directly from Baseclear.
Description-md5: 06f04f25cd2bcad772ca2f11e3bf6cbb