How to Install and Uninstall biom-format-tools Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 22,2024

1. Install "biom-format-tools" package

This is a short guide on how to install biom-format-tools on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                biom-format-tools
            
                    
    
    Copied

2. Uninstall "biom-format-tools" package

This guide let you learn how to uninstall biom-format-tools on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                biom-format-tools
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the biom-format-tools package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: biom-format-tools
Priority: optional
Section: universe/misc
Installed-Size: 12
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Source: python-biom-format
Version: 2.1.5+dfsg-1
Depends: python3-numpy (>= 1:1.10.0~b1), python3-numpy-abi9, python3:any, python3-biom-format (= 2.1.5+dfsg-1)
Filename: pool/universe/p/python-biom-format/biom-format-tools_2.1.5+dfsg-1_amd64.deb
Size: 2576
MD5sum: 35028ead71e54cd3502fab6c06503d2b
SHA1: dbf14868cb973ce02a1a1c1d8729674380d9159f
SHA256: a35ef7f5b5468b85179e7eca2deeb937e993a446dccaa2d2059d99446cf7e4e1
Description-en: command-line tools for BIOM format
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
.
This package provides the command-line tools for the BIOM format Python
package.
Description-md5: daa62587623a0ed8c537470ee5bfb0c4
Homepage: http://biom-format.org/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu