How to Install and Uninstall clonalframe Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: December 24,2024

1. Install "clonalframe" package

This guide let you learn how to install clonalframe on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                clonalframe
            
                    
    
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2. Uninstall "clonalframe" package

This tutorial shows how to uninstall clonalframe on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                clonalframe
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the clonalframe package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: clonalframe
Priority: optional
Section: universe/science
Installed-Size: 118
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 1.2-4
Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgsl2, libstdc++6 (>= 5.2)
Filename: pool/universe/c/clonalframe/clonalframe_1.2-4_amd64.deb
Size: 48984
MD5sum: fecea6187b7b35658c159836ae59f378
SHA1: 69d09e5e9388256c2790d0718e75f23981c58601
SHA256: 496f25037234f6a9e9f38ad1d5e9fda9d080a1d88fc58939f37114f48ba1fefa
Description-en: inference of bacterial microevolution using multilocus sequence data
ClonalFrame identifies the clonal relationships between the members of
a sample, while also estimating the chromosomal position of homologous
recombination events that have disrupted the clonal inheritance.
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ClonalFrame can be applied to any kind of sequence data, from a single
fragment of DNA to whole genomes. It is well suited for the analysis of
MLST data, where 7 gene fragments have been sequenced, but becomes
progressively more powerful as the sequenced regions increase in length
and number up to whole genomes. However, it requires the sequences to be
aligned. If you have genomic data that is not aligned, it is recommend to
use Mauve which produces alignment of whole bacterial genomes in
exactly the format required for analysis with ClonalFrame.
Description-md5: 819b92534a0771df03d25aa1b0334115
Homepage: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu