How to Install and Uninstall kraken Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: December 23,2024

1. Install "kraken" package

Please follow the step by step instructions below to install kraken on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                kraken
            
                    
    
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2. Uninstall "kraken" package

Please follow the instructions below to uninstall kraken on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                kraken
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the kraken package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: kraken
Priority: optional
Section: universe/science
Installed-Size: 352
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 0.10.5~beta-2
Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libgomp1 (>= 4.9), libstdc++6 (>= 5.2)
Filename: pool/universe/k/kraken/kraken_0.10.5~beta-2_amd64.deb
Size: 80094
MD5sum: 018199b11988e69ad7900202685defd1
SHA1: 744c402a4d07e74cbe39581c26ac53e1ca4cf957
SHA256: cac6dadc5db48973c78a37446b4d350051b82ddc41f26d5caf3bf55627c6ec77
Description-en: assigning taxonomic labels to short DNA sequences
Kraken is a system for assigning taxonomic labels to short DNA
sequences, usually obtained through metagenomic studies. Previous
attempts by other bioinformatics software to accomplish this task have
often used sequence alignment or machine learning techniques that were
quite slow, leading to the development of less sensitive but much faster
abundance estimation programs. Kraken aims to achieve high sensitivity
and high speed by utilizing exact alignments of k-mers and a novel
classification algorithm.
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In its fastest mode of operation, for a simulated metagenome of 100 bp
reads, Kraken processed over 4 million reads per minute on a single
core, over 900 times faster than Megablast and over 11 times faster than
the abundance estimation program MetaPhlAn. Kraken's accuracy is
comparable with Megablast, with slightly lower sensitivity and very high
precision.
Description-md5: 4dc49da345dc88dcd656d9a30393ce7e
Homepage: http://ccb.jhu.edu/software/kraken/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu