How to Install and Uninstall python-biom-format Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 07,2024

1. Install "python-biom-format" package

In this section, we are going to explain the necessary steps to install python-biom-format on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                python-biom-format
            
                    
    
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2. Uninstall "python-biom-format" package

This guide covers the steps necessary to uninstall python-biom-format on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                python-biom-format
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python-biom-format package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: python-biom-format
Priority: optional
Section: universe/python
Installed-Size: 1592
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 2.1.5+dfsg-1
Depends: python-numpy (>= 1:1.10.0~b1), python-numpy-abi9, pyqi, python (<< 2.8), python (>= 2.7~), python-click, python-future, python-scipy, python:any (>= 2.7.5-5~), libc6 (>= 2.4)
Suggests: python-biom-format-doc
Filename: pool/universe/p/python-biom-format/python-biom-format_2.1.5+dfsg-1_amd64.deb
Size: 164366
MD5sum: 0eeb3a8b8a9b32091b82ca0ddcfcae7a
SHA1: d2dfb62fc06968533725bd2eb70a286565185cf6
SHA256: 798ef2420207e8495155324ec236c58d505c034cc5215caf4c59301cd9ba8820
Description-en: Biological Observation Matrix (BIOM) format (Python 2)
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation
contingency tables. BIOM is a recognized standard for the Earth
Microbiome Project and is a Genomics Standards Consortium candidate
project.
.
The BIOM format is designed for general use in broad areas of
comparative -omics. For example, in marker-gene surveys, the primary use
of this format is to represent OTU tables: the observations in this case
are OTUs and the matrix contains counts corresponding to the number of
times each OTU is observed in each sample. With respect to metagenome
data, this format would be used to represent metagenome tables: the
observations in this case might correspond to SEED subsystems, and the
matrix would contain counts corresponding to the number of times each
subsystem is observed in each metagenome. Similarly, with respect to
genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and
the counts would correspond to the number of times each subsystem is
observed in each genome.
.
This package provides the BIOM format library for the Python 2 interpreter.
Description-md5: 4fa3a129f6ba9d584f7760eaa284dfd8
Homepage: http://biom-format.org/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu