How to Install and Uninstall python3-pyfaidx Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: December 25,2024

1. Install "python3-pyfaidx" package

Please follow the guidance below to install python3-pyfaidx on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                python3-pyfaidx
            
                    
    
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2. Uninstall "python3-pyfaidx" package

This guide let you learn how to uninstall python3-pyfaidx on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                python3-pyfaidx
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python3-pyfaidx package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: python3-pyfaidx
Priority: optional
Section: universe/python
Installed-Size: 92
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Source: python-pyfaidx
Version: 0.4.5.2-1
Depends: python3-six, python3:any (>= 3.3.2-2~)
Filename: pool/universe/p/python-pyfaidx/python3-pyfaidx_0.4.5.2-1_all.deb
Size: 20120
MD5sum: 3020ef11c27b180a3dab8483a6331642
SHA1: f02fcf09f442e6eabbe96d92bcfa5c33df14c8ff
SHA256: 56dbdce9469c1b25e52f30980d7d265d14727f11478cccf5823d93e5a2204eaa
Description-en: efficient random access to fasta subsequences for Python 3
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
.
This package provides the Python 3 modules to access fasta files.
Description-md5: 8b4b562961c5bb65ecfef8c074f66a35
Homepage: https://github.com/mdshw5/pyfaidx
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu