How to Install and Uninstall qiime-doc Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 23,2024

1. Install "qiime-doc" package

This guide let you learn how to install qiime-doc on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                qiime-doc
            
                    
    
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2. Uninstall "qiime-doc" package

Please follow the step by step instructions below to uninstall qiime-doc on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                qiime-doc
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the qiime-doc package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: qiime-doc
Priority: extra
Section: universe/doc
Installed-Size: 21079
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Source: qiime
Version: 1.8.0+dfsg-4
Depends: libjs-jquery, libjs-underscore
Filename: pool/universe/q/qiime/qiime-doc_1.8.0+dfsg-4_all.deb
Size: 7892752
MD5sum: 2b7a513677e1049ad8a1d8e6e55b634e
SHA1: de873395d6b240f6145ebbda9a8829ab429a8949
SHA256: f5c7ae5eda68ac805b3b930a4df8ddd642b62df9d778a534c75c04cf3ecaa5bd
Description-en: Quantitative Insights Into Microbial Ecology (tutorial)
QIIME (canonically pronounced ‘Chime’) is a pipeline for performing
microbial community analysis that integrates many third party tools which
have become standard in the field. A standard QIIME analysis begins with
sequence data from one or more sequencing platforms, including
* Sanger,
* Roche/454, and
* Illumina GAIIx.
With all the underlying tools installed,
of which not all are yet available in Debian (or any other Linux
distribution), QIIME can perform
* library de-multiplexing and quality filtering;
* denoising with PyroNoise;
* OTU and representative set picking with uclust, cdhit, mothur, BLAST,
or other tools;
* taxonomy assignment with BLAST or the RDP classifier;
* sequence alignment with PyNAST, muscle, infernal, or other tools;
* phylogeny reconstruction with FastTree, raxml, clearcut, or other tools;
* alpha diversity and rarefaction, including visualization of results,
using over 20 metrics including Phylogenetic Diversity, chao1, and
observed species;
* beta diversity and rarefaction, including visualization of results,
using over 25 metrics including weighted and unweighted UniFrac,
Euclidean distance, and Bray-Curtis;
* summarization and visualization of taxonomic composition of samples
using pie charts and histograms
and many other features.
.
QIIME includes parallelization capabilities for many of the
computationally intensive steps. By default, these are configured to
utilize a mutli-core environment, and are easily configured to run in
a cluster environment. QIIME is built in Python using the open-source
PyCogent toolkit. It makes extensive use of unit tests, and is highly
modular to facilitate custom analyses.
.
This package contains the documentation and a tutorial.
Description-md5: dc039fca5c4ff121fcb7f82f58419028
Homepage: http://www.qiime.org/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu