How to Install and Uninstall tandem-mass Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: May 19,2024

1. Install "tandem-mass" package

Learn how to install tandem-mass on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                tandem-mass
            
                    
    
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2. Uninstall "tandem-mass" package

Please follow the steps below to uninstall tandem-mass on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                tandem-mass
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the tandem-mass package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: tandem-mass
Priority: optional
Section: universe/science
Installed-Size: 639
Maintainer: Ubuntu Developers
Original-Maintainer: The Debichem Group
Architecture: amd64
Version: 1:2013.09.01-2
Depends: libc6 (>= 2.14), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.9)
Filename: pool/universe/t/tandem-mass/tandem-mass_2013.09.01-2_amd64.deb
Size: 201858
MD5sum: 70540f60445ef9391b036caf16083bd8
SHA1: dd143594c4c12b9f4ce0ab413fe86611b9a28b52
SHA256: f35cc467e1eda793249b1594e6a1047275be8ab66db4c17cbc2917d449dc6841
Description-en: mass spectrometry software for protein identification
X! Tandem can match tandem mass spectra with peptide sequences, in a
process that is commonly used to perform protein identification.
.
This software has a very simple, unsophisticated application
programming interface (API): it simply takes an XML file of
instructions on its command line, and outputs the results into an XML
file, which has been specified in the input XML file. The output file
format is described at
\fI`http://www.thegpm.org/docs/X_series_output_form.pdf'\fR.
.
Unlike some earlier generation search engines, all of the X! Series
search engines calculate statistical confidence (expectation values)
for all of the individual spectrum-to-sequence assignments. They also
reassemble all of the peptide assignments in a data set onto the
known protein sequences and assign the statistical confidence that
this assembly and alignment is non-random. The formula for which can
be found here. Therefore, separate assembly and statistical analysis
software, e.g. PeptideProphet and ProteinProphet, do not need to be
used.
Description-md5: b2b199c54c3d3ffa5cc004307f2cc9d5
Homepage: http://www.thegpm.org/TANDEM/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu