r-bsgenome.hsapiens.ucsc.hg19 on AUR (Arch User Repository)

Last updated: January 11,2025

1. Install "r-bsgenome.hsapiens.ucsc.hg19" effortlessly via AUR with the help of a helper(YAY)

a. Install YAY (https://github.com/Jguer/yay)


    
        
            $
        

        
            
                sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
            
                    
    
    Copied

b. Install r-bsgenome.hsapiens.ucsc.hg19 on Arch using YAY


    
        
            $
        

        
            
                yay -S
            
                        
                r-bsgenome.hsapiens.ucsc.hg19
            
                    
    
    Copied

* (Optional) Uninstall r-bsgenome.hsapiens.ucsc.hg19 on Arch using YAY


    
        
            $
        

        
            
                yay -Rns
            
                        
                r-bsgenome.hsapiens.ucsc.hg19
            
                    
    
    Copied

2. Manually Install "r-bsgenome.hsapiens.ucsc.hg19" via AUR

a. Ensure you have the base development tools and git installed with:


    
        
            $
        

        
            
                sudo pacman -S --needed
            
                        
                base-devel git
            
                    
    
    Copied

b. Clone r-bsgenome.hsapiens.ucsc.hg19's git locally


    
        
            $
        

        
            
                git clone https://aur.archlinux.org/r-bsgenome.hsapiens.ucsc.hg19.git 
            
                        
                ~/r-bsgenome.hsapiens.ucsc.hg19
            
                    
    
    Copied

c. Go to ~/r-bsgenome.hsapiens.ucsc.hg19 folder and install it


   
    
        
            $
        

        
            
                cd
            
                        
                ~/r-bsgenome.hsapiens.ucsc.hg19
            
                    
    
    Copied

    

   
    
        
            $
        

        
            
                makepkg -si
            
                    
    
    Copied

3. Information about the r-bsgenome.hsapiens.ucsc.hg19 package on Arch User Repository (AUR)

ID: 1090892
Name: r-bsgenome.hsapiens.ucsc.hg19
PackageBaseID: 179801
PackageBase: r-bsgenome.hsapiens.ucsc.hg19
Version: 1.4.3-4
Description: Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)
URL: https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19
NumVotes: 0
Popularity: 0
OutOfDate:
Maintainer: BioArchLinuxBot
Submitter: BioArchLinuxBot
FirstSubmitted: 1654464518
LastModified: 1654464518
URLPath: /cgit/aur.git/snapshot/r-bsgenome.hsapiens.ucsc.hg19.tar.gz