r-transcriptr on AUR (Arch User Repository)

Last updated: November 25,2024

1. Install "r-transcriptr" effortlessly via AUR with the help of a helper(YAY)

a. Install YAY (https://github.com/Jguer/yay)


    
        
            $
        

        
            
                sudo pacman -S --needed git base-devel && git clone https://aur.archlinux.org/yay.git && cd yay && makepkg -si
            
                    
    
    Copied

b. Install r-transcriptr on Arch using YAY


    
        
            $
        

        
            
                yay -S
            
                        
                r-transcriptr
            
                    
    
    Copied

* (Optional) Uninstall r-transcriptr on Arch using YAY


    
        
            $
        

        
            
                yay -Rns
            
                        
                r-transcriptr
            
                    
    
    Copied

2. Manually Install "r-transcriptr" via AUR

a. Ensure you have the base development tools and git installed with:


    
        
            $
        

        
            
                sudo pacman -S --needed
            
                        
                base-devel git
            
                    
    
    Copied

b. Clone r-transcriptr's git locally


    
        
            $
        

        
            
                git clone https://aur.archlinux.org/r-transcriptr.git 
            
                        
                ~/r-transcriptr
            
                    
    
    Copied

c. Go to ~/r-transcriptr folder and install it


   
    
        
            $
        

        
            
                cd
            
                        
                ~/r-transcriptr
            
                    
    
    Copied

    

   
    
        
            $
        

        
            
                makepkg -si
            
                    
    
    Copied

3. Information about the r-transcriptr package on Arch User Repository (AUR)

ID: 1343466
Name: r-transcriptr
PackageBaseID: 182749
PackageBase: r-transcriptr
Version: 1.30.0-1
Description: An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification
URL: https://bioconductor.org/packages/transcriptR
NumVotes: 0
Popularity: 0
OutOfDate:
Maintainer: BioArchLinuxBot
Submitter: BioArchLinuxBot
FirstSubmitted: 1654538115
LastModified: 1698503302
URLPath: /cgit/aur.git/snapshot/r-transcriptr.tar.gz