How to Install and Uninstall abacas Package on Kali Linux

Last updated: April 26,2024

1. Install "abacas" package

Here is a brief guide to show you how to install abacas on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                abacas
            
                    
    
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2. Uninstall "abacas" package

Please follow the step by step instructions below to uninstall abacas on Kali Linux:


    
        
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                sudo apt remove
            
                        
                abacas
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the abacas package on Kali Linux

Package: abacas
Version: 1.3.1-9
Installed-Size: 109
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: mummer
Recommends: primer3
Suggests: abacas-examples
Size: 24640
SHA256: 2da6779d023ba5a2fe36d063533f3b5304dbba264eb18206d5f2f0885ec47513
SHA1: 24541e24e1e931be7907f99ea267e96cbe4d6b18
MD5sum: c54c1b320413880836acef1cb2403c4e
Description: close gaps in genomic alignments from short reads
ABACAS (Algorithm Based Automatic Contiguation of Assembled Sequences)
intends to rapidly contiguate (align, order, orientate), visualize and
design primers to close gaps on shotgun assembled contigs based on a
reference sequence.
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ABACAS uses MUMmer to find alignment positions and identify syntenies
of assembled contigs against the reference. The output is then processed
to generate a pseudomolecule taking overlapping contigs and gaps in to
account. ABACAS generates a comparison file that can be used to
visualize ordered and oriented contigs in ACT. Synteny is represented by
red bars where colour intensity decreases with lower values of percent
identity between comparable blocks. Information on contigs such as the
orientation, percent identity, coverage and overlap with other contigs
can also be visualized by loading the outputted feature file on ACT.
Description-md5:
Homepage: http://abacas.sourceforge.net/
Tag: field::biology, field::biology:bioinformatics, implemented-in::perl,
interface::commandline, interface::text-mode, role::program,
scope::utility
Section: science
Priority: optional
Filename: pool/main/a/abacas/abacas_1.3.1-9_all.deb