How to Install and Uninstall abacas Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 21,2024

1. Install "abacas" package

Please follow the instructions below to install abacas on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                abacas
            
                    
    
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2. Uninstall "abacas" package

Please follow the guidelines below to uninstall abacas on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                abacas
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the abacas package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: abacas
Priority: optional
Section: universe/science
Installed-Size: 109
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Version: 1.3.1-3
Depends: mummer
Filename: pool/universe/a/abacas/abacas_1.3.1-3_all.deb
Size: 23886
MD5sum: c4f7ad366da26ddd98046835c91b8230
SHA1: 753a9d915a431f614f4a6606ab72f6901dc39192
SHA256: a9cdaebb53b4aed7eb4765314e95fd54128c16c31eceb10ae40693fedd000b79
Description-en: Algorithm Based Automatic Contiguation of Assembled Sequences
ABACAS is intended to rapidly contiguate (align, order, orientate),
visualize and design primers to close gaps on shotgun assembled contigs
based on a reference sequence.
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ABACAS uses MUMmer to find alignment positions and identify syntenies
of assembled contigs against the reference. The output is then processed
to generate a pseudomolecule taking overlapping contigs and gaps in to
account. ABACAS generates a comparision file that can be used to
visualize ordered and oriented contigs in ACT. Synteny is represented by
red bars where colour intensity decreases with lower values of percent
identity between comparable blocks. Information on contigs such as the
orientation, percent identity, coverage and overlap with other contigs
can also be visualized by loading the outputted feature file on ACT.
Description-md5: 4b41b5c137bf37850b7af48a1408fd37
Homepage: http://abacas.sourceforge.net/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu