How to Install and Uninstall conservation-code Package on Kali Linux

Last updated: April 19,2024

1. Install "conservation-code" package

Please follow the guidance below to install conservation-code on Kali Linux


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                conservation-code
            
                    
    
    Copied

2. Uninstall "conservation-code" package

Please follow the step by step instructions below to uninstall conservation-code on Kali Linux:


    
        
            $
        

        
            
                sudo apt remove
            
                        
                conservation-code
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the conservation-code package on Kali Linux

Package: conservation-code
Version: 20110309.0-8
Installed-Size: 115
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: python3:any, python3-numpy
Enhances: concavity
Size: 24112
SHA256: 56776d84d34085340a341bff21ef15cf63322a17b9caef8cee96d027dd325879
SHA1: 5f765b05718832455b4d64793be925c83ebb34fd
MD5sum: 303e07420737374ec735caa28c48ca45
Description: protein sequence conservation scoring tool
This package provides score_conservation(1), a tool to score protein sequence
conservation.
.
The following conservation scoring methods are implemented:
* sum of pairs
* weighted sum of pairs
* Shannon entropy
* Shannon entropy with property groupings (Mirny and Shakhnovich 1995,
Valdar and Thornton 2001)
* relative entropy with property groupings (Williamson 1995)
* von Neumann entropy (Caffrey et al 2004)
* relative entropy (Samudrala and Wang 2006)
* Jensen-Shannon divergence (Capra and Singh 2007)
.
A window-based extension that incorporates the estimated conservation of
sequentially adjacent residues into the score for each column is also given.
This window approach can be applied to any of the conservation scoring
methods.
.
The program accepts alignments in the CLUSTAL and FASTA formats.
.
The sequence-specific output can be used as the conservation input for
concavity.
.
Conservation is highly predictive in identifying catalytic sites and
residues near bound ligands.
Description-md5:
Homepage: https://compbio.cs.princeton.edu/conservation/
Section: science
Priority: optional
Filename: pool/main/c/conservation-code/conservation-code_20110309.0-8_all.deb