How to Install and Uninstall conservation-code Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 07,2024

1. Install "conservation-code" package

Learn how to install conservation-code on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                conservation-code
            
                    
    
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2. Uninstall "conservation-code" package

Please follow the steps below to uninstall conservation-code on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                conservation-code
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the conservation-code package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: conservation-code
Priority: extra
Section: universe/science
Installed-Size: 100
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Version: 20110309.0-4
Depends: python:any, python-numpy
Filename: pool/universe/c/conservation-code/conservation-code_20110309.0-4_all.deb
Size: 21244
MD5sum: 932de6dd671e26696bfc872829a460f8
SHA1: c45723ada7508b4bb75c592c0856110427d589a1
SHA256: cde22f05817e3cedbc44b4288fb0fd5ccf354dfca3cc6e1f261ee6f264b2e46f
Description-en: protein sequence conservation scoring tool
This package provides score_conservation(1), a tool to score protein sequence
conservation.
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The following conservation scoring methods are implemented:
* sum of pairs
* weighted sum of pairs
* Shannon entropy
* Shannon entropy with property groupings (Mirny and Shakhnovich 1995,
Valdar and Thornton 2001)
* relative entropy with property groupings (Williamson 1995)
* von Neumann entropy (Caffrey et al 2004)
* relative entropy (Samudrala and Wang 2006)
* Jensen-Shannon divergence (Capra and Singh 2007)
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A window-based extension that incorporates the estimated conservation of
sequentially adjacent residues into the score for each column is also given.
This window approach can be applied to any of the conservation scoring
methods.
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The program accepts alignments in the CLUSTAL and FASTA formats.
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The sequence-specific output can be used as the conservation input for
concavity.
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Conservation is highly predictive in identifying catalytic sites and
residues near bound ligands.
Description-md5: 35f238c6a81ce482741e5d5359932062
Enhances: concavity
Homepage: http://compbio.cs.princeton.edu/conservation/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu