How to Install and Uninstall dotter Package on Kali Linux

Last updated: November 22,2024

1. Install "dotter" package

Learn how to install dotter on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                dotter
            
                    
    
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2. Uninstall "dotter" package

In this section, we are going to explain the necessary steps to uninstall dotter on Kali Linux:


    
        
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                sudo apt remove
            
                        
                dotter
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the dotter package on Kali Linux

Package: dotter
Source: seqtools (4.44.1+dfsg-7)
Version: 4.44.1+dfsg-7+b2
Installed-Size: 813
Maintainer: Debian Med Packaging Team
Architecture: amd64
Provides: acedb-other-dotter
Depends: libc6 (>= 2.34), libcairo2 (>= 1.2.4), libcurl4 (>= 7.16.2), libgbtools0 (>= 4.44.1+dfsg), libgcc-s1 (>= 3.0), libglib2.0-0 (>= 2.22.0), libgtk2.0-0 (>= 2.12.0), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libstdc++6 (>= 5.2)
Size: 613768
SHA256: 15217dc1cc185d52d9b00e773f8b17ae826aae2e922e9685d60edf9bc5d3b1da
SHA1: 2bdc5dcef0c2f9cb0600e8d7bdc0e449ec52d8a4
MD5sum: 9679159964f8395822a9a993e0e3b25f
Description: detailed comparison of two genomic sequences
Dotter is a graphical dot-matrix program for detailed comparison of two
sequences.
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* Every residue in one sequence is compared to every residue in the
other, and a matrix of scores is calculated.
* One sequence is plotted on the x-axis and the other on the y-axis.
* Noise is filtered out so that alignments appear as diagonal lines.
* Pairwise scores are averaged over a sliding window to make the score
matrix more intelligible.
* The averaged score matrix forms a three-dimensional landscape,
with the two sequences in two dimensions and the height of the
peaks in the third. This landscape is projected onto two
dimensions using a grey-scale image - the darker grey of a peak,
the higher the score is.
* The contrast and threshold of the grey-scale image can be adjusted
interactively, without having to recalculate the score matrix.
* An Alignment Tool is provided to examine the sequence alignment that
the grey-scale image represents.
* Known high-scoring pairs can be loaded from a GFF file and overlaid
onto the plot.
* Gene models can be loaded from GFF and displayed alongside the
relevant axis.
* Compare a sequence against itself to find internal repeats.
* Find overlaps between multiple sequences by making a dot-plot of all
sequences versus themselves.
* Run Dotter in batch mode to create large, time-consuming dot-plots as
a background process.
Description-md5:
Homepage: https://www.sanger.ac.uk/science/tools/seqtools
Tag: uitoolkit::gtk
Section: science
Priority: optional
Filename: pool/main/s/seqtools/dotter_4.44.1+dfsg-7+b2_amd64.deb