How to Install and Uninstall mapsembler2 Package on Kali Linux

Last updated: May 18,2024

1. Install "mapsembler2" package

Learn how to install mapsembler2 on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                mapsembler2
            
                    
    
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2. Uninstall "mapsembler2" package

This tutorial shows how to uninstall mapsembler2 on Kali Linux:


    
        
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                sudo apt remove
            
                        
                mapsembler2
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mapsembler2 package on Kali Linux

Package: mapsembler2
Version: 2.2.4+dfsg1-4
Installed-Size: 1283
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.4), bc
Size: 724460
SHA256: dc19215fef2754160fa19d5ec0f42e8c7d5fec2529d3e62ca0c06e408a12faec
SHA1: 1e66211c7626b445106bade9aa6c9793e79d9e06
MD5sum: 1677caccbbf62dc34235b611c6d9e015
Description: bioinformatics targeted assembly software
Mapsembler2 is a targeted assembly software.
It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not)
and a set of input sequences (starters).
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It first determines if each starter is read-coherent, e.g. whether reads
confirm the presence of each starter in the original sequence.
Then for each read-coherent starter, Mapsembler2 outputs its sequence
neighborhood as a linear sequence or as a graph, depending on the user choice.
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Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de
Bruijn graph assembly where read-coherence was not enforced.
- Checks if a gene (input as starter) has an homolog in a set of reads
- Checks if a known enzyme is present in a metagenomic NGS read set.
- Enrich unmappable reads by extending them, possibly making them mappable
- Checks what happens at the extremities of a contig
- Remove contaminants or symbiont reads from a read set
Description-md5:
Homepage: http://colibread.inria.fr/mapsembler2/
Section: science
Priority: optional
Filename: pool/main/m/mapsembler2/mapsembler2_2.2.4+dfsg1-4_amd64.deb