How to Install and Uninstall mindthegap Package on Kali Linux

Last updated: April 30,2024

1. Install "mindthegap" package

Please follow the steps below to install mindthegap on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                mindthegap
            
                    
    
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2. Uninstall "mindthegap" package

In this section, we are going to explain the necessary steps to uninstall mindthegap on Kali Linux:


    
        
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                sudo apt remove
            
                        
                mindthegap
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mindthegap package on Kali Linux

Package: mindthegap
Version: 2.3.0-3
Installed-Size: 1053
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), libgatbcore3 (>= 1.4.2+dfsg-7), libgcc-s1 (>= 3.0), libhdf5-103-1, libstdc++6 (>= 13.1)
Size: 248420
SHA256: 842ce24ba01a67840e3fcf122c0a9e2225b6d91a649bc0fa5629181c5fff2daf
SHA1: 15a293f4bbc3dd182bd4557650bb8de85c5e15e3
MD5sum: b26ea438d4b283978f90f85a91dd8b07
Description: performs detection and assembly of DNA insertion variants in NGS read datasets
Designed to call insertions of any size, whether they are novel or
duplicated, homozygous or heterozygous in the donor genome. It takes as
input a set of reads and a reference genome. It outputs two sets of
FASTA sequences: one is the set of breakpoints of detection insertion
sites, the other is the set of assembled insertions for each
breakpoint. MindTheGap can also be used as a genome assembly finishing
tool. It can fill the gaps between a set of input contigs without any a
priori on their relative order and orientation. It outputs the results
in gfa file.
Description-md5:
Homepage: https://github.com/GATB/MindTheGap
Section: science
Priority: optional
Filename: pool/main/m/mindthegap/mindthegap_2.3.0-3_amd64.deb