How to Install and Uninstall mindthegap Package on Ubuntu 21.10 (Impish Indri)

Last updated: April 30,2024

1. Install "mindthegap" package

Learn how to install mindthegap on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                mindthegap
            
                    
    
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2. Uninstall "mindthegap" package

This guide let you learn how to uninstall mindthegap on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                mindthegap
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mindthegap package on Ubuntu 21.10 (Impish Indri)

Package: mindthegap
Architecture: amd64
Version: 2.2.2-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1016
Depends: libc6 (>= 2.14), libgatbcore3 (>= 1.4.2+dfsg), libgcc-s1 (>= 3.0), libhdf5-103-1, libstdc++6 (>= 9)
Filename: pool/universe/m/mindthegap/mindthegap_2.2.2-2_amd64.deb
Size: 231216
MD5sum: 3f8e13417e5be140311f4bbbe77ecb5d
SHA1: 8aa0b7bf9fa1d487921f8fed13120ce9849a38f1
SHA256: 5232876fd34ac6370366c5c265e8863f9be2095c6bf4b9565efd5aa1f13532ae
SHA512: 5c8bd244585c34834d4ce5fd77026028c80d98f78fedd21145678c065e1bc7e236301f2e3f85e248c2e3bc170a94c19a16a7c2a7029c88a771bdec6fee69c796
Homepage: https://github.com/GATB/MindTheGap
Description-en: performs detection and assembly of DNA insertion variants in NGS read datasets
Designed to call insertions of any size, whether they are novel or
duplicated, homozygous or heterozygous in the donor genome. It takes as
input a set of reads and a reference genome. It outputs two sets of
FASTA sequences: one is the set of breakpoints of detection insertion
sites, the other is the set of assembled insertions for each
breakpoint. MindTheGap can also be used as a genome assembly finishing
tool. It can fill the gaps between a set of input contigs without any a
priori on their relative order and orientation. It outputs the results
in gfa file.
Description-md5: 5d07b44122645144d6449f79c6fd6d87