How to Install and Uninstall parsnp Package on Kali Linux

Last updated: September 20,2024

Deprecated! Installation of this package may no longer be supported.

1. Install "parsnp" package

This guide covers the steps necessary to install parsnp on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                parsnp
            
                    
    
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2. Uninstall "parsnp" package

Please follow the steps below to uninstall parsnp on Kali Linux:


    
        
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                sudo apt remove
            
                        
                parsnp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the parsnp package on Kali Linux

Package: parsnp
Version: 2.0.3+dfsg-1
Installed-Size: 1945
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 13.1), python3:any, python3-biopython, python3-numpy, python3-pyspoa, python3-tqdm, fasttree, harvest-tools, mummer, phipack, python3, raxml, time
Recommends: python3-dendropy
Size: 204452
SHA256: bec5abf643123adb0003d375836d331f0b17a36207c7d1ad02add00a7bac407a
SHA1: 0aa6c4f77f93e7dc80dde775d09e8c57be0f02cf
MD5sum: 6280db3eec1cdfb414df455db83d5ad5
Description: rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
Description-md5:
Homepage: https://harvest.readthedocs.org/en/latest/content/parsnp.html
Section: science
Priority: optional
Filename: pool/main/p/parsnp/parsnp_2.0.3+dfsg-1_amd64.deb