How to Install and Uninstall parsnp Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 20,2024

1. Install "parsnp" package

Please follow the guidelines below to install parsnp on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                parsnp
            
                    
    
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2. Uninstall "parsnp" package

Here is a brief guide to show you how to uninstall parsnp on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                parsnp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the parsnp package on Ubuntu 21.10 (Impish Indri)

Package: parsnp
Architecture: amd64
Version: 1.5.4+dfsg-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1885
Depends: libc6 (>= 2.27), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 5.2), python3:any, python3-numpy, fasttree, harvest-tools, mummer, phipack, python3, raxml
Recommends: python3-dendropy
Filename: pool/universe/p/parsnp/parsnp_1.5.4+dfsg-1_amd64.deb
Size: 189776
MD5sum: 46675ee1123e95bcb184eab5790ff6ec
SHA1: 83840b42faaf7c8bd6cc12953652f351e56f396a
SHA256: a6413c87e52202a2e1a8b718849c8c3a2c575b7defa28ce98697a3ba73851c3b
SHA512: c3e86eebe240473a28fae29d0cbc6f43c4e17f118e66a6e4f998589c36f541aded12129a63e091d1f2c8f8433581cda9b142e6064f76d529f2b6e58d2f22d1cf
Homepage: https://harvest.readthedocs.org/en/latest/content/parsnp.html
Description-en: rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
Description-md5: e2e6d59e8a521577f278267009bb94b4