How to Install and Uninstall phyml Package on Kali Linux

Last updated: May 19,2024

1. Install "phyml" package

Please follow the steps below to install phyml on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                phyml
            
                    
    
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2. Uninstall "phyml" package

Please follow the guidelines below to uninstall phyml on Kali Linux:


    
        
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                sudo apt remove
            
                        
                phyml
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the phyml package on Kali Linux

Package: phyml
Version: 3:3.3.20220408-3
Installed-Size: 4419
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), libopenmpi3 (>= 4.1.4), openmpi-bin
Size: 1103096
SHA256: 219c33f8814f714589718d2ac2b00f002674d193a3700f2e7cec75e54f7549d1
SHA1: 9b91e47b9298efde08cde7fcccb548945c4deed8
MD5sum: 05c8e5cf027e5f15ae1718f8fdd4670f
Description: Phylogenetic estimation using Maximum Likelihood
PhyML is a software that estimates maximum likelihood phylogenies from
alignments of nucleotide or amino acid sequences. It provides a wide
range of options that were designed to facilitate standard phylogenetic
analyses. The main strengths of PhyML lies in the large number of
substitution models coupled to various options to search the space of
phylogenetic tree topologies, going from very fast and efficient methods
to slower but generally more accurate approaches. It also implements
two methods to evaluate branch supports in a sound statistical framework
(the non-parametric bootstrap and the approximate likelihood ratio test).
.
PhyML was designed to process moderate to large data sets. In theory,
alignments with up to 4,000 sequences 2,000,000 character-long can
be analyzed. In practice however, the amount of memory required to process
a data set is proportional of the product of the number of sequences by their
length. Hence, a large number of sequences can only be processed provided
that they are short. Also, PhyML can handle long sequences provided that
they are not numerous. With most standard personal computers, the “comfort
zone” for PhyML generally lies around 3 to 500 sequences less than 2,000
character long.
.
This package also includes PhyTime.
Description-md5:
Homepage: http://www.atgc-montpellier.fr/phyml
Tag: biology::peptidic, field::biology, field::biology:bioinformatics,
implemented-in::c, interface::commandline, role::program,
use::analysing, use::comparing, works-with::biological-sequence
Section: science
Priority: optional
Filename: pool/main/p/phyml/phyml_3.3.20220408-3_amd64.deb