How to Install and Uninstall phyml Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 18,2024

1. Install "phyml" package

Please follow the instructions below to install phyml on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                phyml
            
                    
    
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2. Uninstall "phyml" package

Learn how to uninstall phyml on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                phyml
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the phyml package on Ubuntu 21.10 (Impish Indri)

Package: phyml
Architecture: amd64
Version: 3:3.3.20200621-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 6418
Depends: libc6 (>= 2.29), libopenmpi3 (>= 4.0.3), openmpi-bin
Filename: pool/universe/p/phyml/phyml_3.3.20200621-1_amd64.deb
Size: 1774232
MD5sum: 078bc36816806589ab299e0b9e999a7d
SHA1: b1f6d6af4b553ba640fd0e3524e9a39aa016650e
SHA256: 7a5d3e41e1f4ee9e5ff1e1d10f9124b81a7e2db8dd365e0f195a04951a26f35e
SHA512: 9734bbe95747acaac06263ece1a1a89fa8a76e43ff7e2d305059a078716a529ba15b7b6d26fc2b920e3bafa9e88af12c93f388dbcb48515e615fd81d86467d65
Homepage: http://www.atgc-montpellier.fr/phyml
Description-en: Phylogenetic estimation using Maximum Likelihood
PhyML is a software that estimates maximum likelihood phylogenies from
alignments of nucleotide or amino acid sequences. It provides a wide
range of options that were designed to facilitate standard phylogenetic
analyses. The main strengths of PhyML lies in the large number of
substitution models coupled to various options to search the space of
phylogenetic tree topologies, going from very fast and efficient methods
to slower but generally more accurate approaches. It also implements
two methods to evaluate branch supports in a sound statistical framework
(the non-parametric bootstrap and the approximate likelihood ratio test).
.
PhyML was designed to process moderate to large data sets. In theory,
alignments with up to 4,000 sequences 2,000,000 character-long can
be analyzed. In practice however, the amount of memory required to process
a data set is proportional of the product of the number of sequences by their
length. Hence, a large number of sequences can only be processed provided
that they are short. Also, PhyML can handle long sequences provided that
they are not numerous. With most standard personal computers, the “comfort
zone” for PhyML generally lies around 3 to 500 sequences less than 2,000
character long.
.
This package also includes PhyTime.
Description-md5: e17d56691eaa63bb88fc849229a6c8a4