How to Install and Uninstall physamp Package on Kali Linux

Last updated: May 05,2024

1. Install "physamp" package

Please follow the step by step instructions below to install physamp on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                physamp
            
                    
    
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2. Uninstall "physamp" package

This guide covers the steps necessary to uninstall physamp on Kali Linux:


    
        
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                sudo apt remove
            
                        
                physamp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the physamp package on Kali Linux

Package: physamp
Version: 1.1.0-4
Installed-Size: 1770
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libbpp-core4 (>= 2.4.1), libbpp-phyl12 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11)
Size: 184824
SHA256: 8fa7be3fa07122ff0157672d97de394812c59103733ed40cc51cca01b130b9dc
SHA1: 26ef3d5fb8dac7ffe0947e44dbf0a0d92c9b8229
MD5sum: a6c3439a96fe506742f0b3291d81e839
Description: sample sequence alignment corresponding to phylogeny
The PhySamp package currently contains two programs: bppphysamp, which
samples sequences according to their similarity, and bppalnoptim, which
samples a sequence alignment by removing sequences in order to maximize
the number of sites suitable for a given analysis. The bppalnoptim
program has three running modes:
* Interactive: the user will be iteratively proposed a set of choices
for sequence removal, with their corresponding site gains. The
procedure stops when the user does not want to remove more sequences,
and the resulting filtered alignment is written.
* Automatic: the user enters an a priori criterion for stopping
the filtering procedure (for instance a minimum number of
sequences to keep).
* Diagnostic: this mode allows one to plot the trade-off curve, by
showing the site gain as a function of the number of removed
sequences.
Description-md5:
Homepage: https://jydu.github.io/physamp/
Section: science
Priority: optional
Filename: pool/main/p/physamp/physamp_1.1.0-4_amd64.deb