How to Install and Uninstall physamp Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 05,2024

1. Install "physamp" package

Please follow the step by step instructions below to install physamp on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                physamp
            
                    
    
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2. Uninstall "physamp" package

Please follow the step by step instructions below to uninstall physamp on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                physamp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the physamp package on Ubuntu 21.10 (Impish Indri)

Package: physamp
Architecture: amd64
Version: 1.1.0-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1785
Depends: libbpp-core4 (>= 2.4.1), libbpp-phyl12 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9)
Breaks: bppsuite (<< 2.3.0-1)
Replaces: bppsuite (<< 2.3.0-1)
Filename: pool/universe/p/physamp/physamp_1.1.0-2_amd64.deb
Size: 187444
MD5sum: 1ede5196b8ca6aec0a1d5581d078daa3
SHA1: fd976ce1642c737e5dc8f2432c2cb74b03e9ea64
SHA256: cfabe8dbd851956fb7084cb49bb18bd02c0f486c24c296c8a62a6987101f1c2a
SHA512: 76901a6d513f4e0351742839007b29db20513c62d668352bf5429f5549253453997592ffc3b8418057054bfd66159b94c9bf86231c0bbdc9f79b5b23b37eb545
Homepage: https://jydu.github.io/physamp/
Description-en: sample sequence alignment corresponding to phylogeny
The PhySamp package currently contains two programs: bppphysamp, which
samples sequences according to their similarity, and bppalnoptim, which
samples a sequence alignment by removing sequences in order to maximize
the number of sites suitable for a given analysis. The bppalnoptim
program has three running modes:
* Interactive: the user will be iteratively proposed a set of choices
for sequence removal, with their corresponding site gains. The
procedure stops when the user does not want to remove more sequences,
and the resulting filtered alignment is written.
* Automatic: the user enters an a priori criterion for stopping
the filtering procedure (for instance a minimum number of
sequences to keep).
* Diagnostic: this mode allows one to plot the trade-off curve, by
showing the site gain as a function of the number of removed
sequences.
Description-md5: 807c3d0c487f6738166e3085fd71cffe