How to Install and Uninstall plasmidid Package on Kali Linux

Last updated: November 23,2024

1. Install "plasmidid" package

This guide let you learn how to install plasmidid on Kali Linux


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                plasmidid
            
                    
    
    Copied

2. Uninstall "plasmidid" package

Please follow the guidance below to uninstall plasmidid on Kali Linux:


    
        
            $
        

        
            
                sudo apt remove
            
                        
                plasmidid
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the plasmidid package on Kali Linux

Package: plasmidid
Version: 1.6.5+dfsg-2
Installed-Size: 331
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: python3:any, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos
Recommends: trimmomatic, spades, python3-biopython, python3-numpy, python3-pandas
Size: 47212
SHA256: e0ec3f8d2467bd4f685d0c2c32b08c57c3cf170714b522094b657a1f11f9336f
SHA1: d70df8852a05fcc1bff14414c8c5661918f59504
MD5sum: fa7b528e02d2aacb387b176a5356e052
Description: mapping-based, assembly-assisted plasmid identification tool
PlasmidID is a mapping-based, assembly-assisted plasmid identification
tool that analyzes and gives graphic solution for plasmid
identification.
.
PlasmidID is a computational pipeline that maps Illumina reads over
plasmid database sequences. The k-mer filtered, most covered
sequences are clustered by identity to avoid redundancy and the
longest are used as scaffold for plasmid reconstruction. Reads are
assembled and annotated by automatic and specific annotation. All
information generated from mapping, assembly, annotation and local
alignment analyses is gathered and accurately represented in a
circular image which allow user to determine plasmidic composition in
any bacterial sample.
Description-md5:
Homepage: https://github.com/BU-ISCIII/plasmidID
Section: science
Priority: optional
Filename: pool/main/p/plasmidid/plasmidid_1.6.5+dfsg-2_amd64.deb