How to Install and Uninstall plasmidid Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 26,2024

1. Install "plasmidid" package

This tutorial shows how to install plasmidid on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                plasmidid
            
                    
    
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2. Uninstall "plasmidid" package

In this section, we are going to explain the necessary steps to uninstall plasmidid on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                plasmidid
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the plasmidid package on Ubuntu 21.10 (Impish Indri)

Package: plasmidid
Architecture: amd64
Version: 1.6.3+dfsg-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 327
Depends: python3:any, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos
Recommends: trimmomatic, spades, python3-biopython, python3-numpy, python3-pandas
Filename: pool/universe/p/plasmidid/plasmidid_1.6.3+dfsg-3_amd64.deb
Size: 44896
MD5sum: a6ee586aace4a1d64ce8c9470de38be5
SHA1: eed0ca00979436c6a1d54dd00cd0e081d53b815c
SHA256: 0ca9636e41e63205bfae2b8ec3e66de92ef71f175070e38a56a2c1c6559e70d9
SHA512: 9c4a8741d79a0b3171238993d723a1ac3d1d39d48f298c034dc31f1e713e344dc437b245843da331028bd37cb6f7b4c7accabe896fc7699418e1a0ebdaa0850e
Homepage: https://github.com/BU-ISCIII/plasmidID
Description-en: mapping-based, assembly-assisted plasmid identification tool
PlasmidID is a mapping-based, assembly-assisted plasmid identification
tool that analyzes and gives graphic solution for plasmid
identification.
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PlasmidID is a computational pipeline that maps Illumina reads over
plasmid database sequences. The k-mer filtered, most covered
sequences are clustered by identity to avoid redundancy and the
longest are used as scaffold for plasmid reconstruction. Reads are
assembled and annotated by automatic and specific annotation. All
information generated from mapping, assembly, annotation and local
alignment analyses is gathered and accurately represented in a
circular image which allow user to determine plasmidic composition in
any bacterial sample.
Description-md5: d2e67d45c872bf3607006dab611aef29